Characterization of Arabidopsis thaliana promoter bidirectionality and antisense RNAs by depletion of nuclear RNA decay enzymes | bioRxiv
Promoter sequence and architecture determine expression variability and confer robustness to genetic variants | eLife
Linking FANTOM5 CAGE peaks to annotations with CAGEscan | Scientific Data
CAGEr: an R package for CAGE (Cap Analysis of Gene Expression) data analysis and promoterome mining
Cap analysis of gene expression reveals alternative promoter usage in a rat model of hypertension | Life Science Alliance
Homer Software and Data Download
A promoter-level mammalian expression atlas | Nature
Systematic analysis of transcription start sites in avian development | PLOS Biology
Epigenomes | Free Full-Text | Promoter-Adjacent DNA Hypermethylation Can Downmodulate Gene Expression: TBX15 in the Muscle Lineage
Comparison between annotated TSS and CAGE. (a) Distance between... | Download Scientific Diagram
EPD The Eukaryotic Promoter Database
Cap analysis of gene expression (CAGE) and noncoding regulatory elements | SpringerLink
CAGE-seq characterization of alternative promoter usage and full-length... | Download Scientific Diagram
CAGEr: an R package for CAGE (Cap Analysis of Gene Expression) data analysis and promoterome mining
Examples of CAGE-inferred promoters and their response to TNF- a... | Download Scientific Diagram
Epigenomes | Free Full-Text | Promoter-Adjacent DNA Hypermethylation Can Downmodulate Gene Expression: TBX15 in the Muscle Lineage
FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions | Genome Biology | Full Text
Frontiers | Characterizing Promoter and Enhancer Sequences by a Deep Learning Method
Alternative promoters in CpG depleted regions pervasively account for epigenetic misregulation of cancer transcriptomes | bioRxiv
Solving the transcription start site identification problem with ADAPT-CAGE: a Machine Learning algorithm for analysis of CAGE data | bioRxiv
Enhancer–promoter entanglement explains their transcriptional interdependence | PNAS
Promoter width. (a) Schematic representation of promoter width... | Download Scientific Diagram
